Banner

GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs1061377 1 rs6812540 chr4:39116423 KLHL5 chr4:39046659-39123828:+ -0.21 -5.73 1.77E-8 Uric acid levels
THCA cis rs7692995 1 rs6813340 chr4:17922866 DCAF16 chr4:17802280-17812381:- -0.2 -4.53 7.49E-6 Height
THCA cis rs853679 1 rs68141011 chr6:28217797 ZKSCAN3 chr6:28317691-28334523:+ -0.24 -4.56 6.37E-6 Depression
THCA cis rs853679 1 rs68141011 chr6:28217797 ZNF187 chr6:28234788-28245978:+ -0.36 -7.18 2.67E-12 Depression
THCA cis rs853679 1 rs68141011 chr6:28217797 ZNF193 chr6:28193067-28201260:+ 0.21 3.83 0.000145 Depression
THCA cis rs853679 1 rs68141011 chr6:28217797 ZNF323 chr6:28292517-28324048:- 0.42 5.57 4.3E-8 Depression
THCA cis rs853679 1 rs68141011 chr6:28217797 ZNF389 chr6:28129551-28137375:+ -0.49 -6.83 2.67E-11 Depression
THCA cis rs853679 1 rs68141011 chr6:28217797 ZSCAN23 chr6:28393287-28411279:- 0.24 5 8.2E-7 Depression
THCA cis rs13191362 1 rs68144677 chr6:163149024 PACRG chr6:163148164-163736523:+ 0.55 7.6 1.62E-13 Body mass index
THCA cis rs7659604 1 rs6814995 chr4:122664963 EXOSC9 chr4:122722472-122738175:+ -0.14 -3.76 0.000193 Type 2 diabetes
THCA cis rs6815464 1 rs6815464 chr4:1309901 KIAA1530 chr4:1341104-1381836:+ -0.23 -3.57 0.000394 Type 2 diabetes
THCA cis rs8020441 1 rs68157165 chr14:51169220 SAV1 chr14:51100360-51135023:- 0.31 6.48 2.27E-10 Cognitive performance
THCA cis rs7659604 1 rs6816071 chr4:122665185 EXOSC9 chr4:122722472-122738175:+ 0.15 3.97 8.17E-5 Type 2 diabetes
THCA cis rs7438704 1 rs6816352 chr4:48367968 OCIAD1 chr4:48833015-48863831:+ 0.14 4.12 4.5E-5 Crohn's disease;Inflammatory bowel disease
THCA cis rs2274459 1 rs68168863 chr6:33758238 IP6K3 chr6:33689443-33714762:- 0.41 6.71 5.55E-11 Obesity (extreme)